PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1468.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 269aa    MW: 29551.9 Da    PI: 6.5263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1468.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-074387553
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                         + erE+ RRd++++ f eL   l ++     +K +K++iL+ +++ +k+
  Bostr.7867s1468.1.p 43 KAEREKPRRDKLKEQFLELGNALDPN----RPKTDKVSILTDTIQVLKD 87
                         589********************997....79************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-1337108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2113888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-44193No hitNo description
PfamPF000103.1E-54387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1143109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-64494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDQSKKPKTC SDDSSASSSS SSGHNLRAEM VVEVKKEAVC SRKAEREKPR RDKLKEQFLE  60
LGNALDPNRP KTDKVSILTD TIQVLKDVMS QVERLKAEYA TLSQESRELI HEKSELSEEK  120
ATLKSDIEIL NAQYQHRVRS MVPWIPHYSY PIPVVAITQG QSTFIPYSAS FVNPLIEEAS  180
IQQRSSSSGA SSKHDSKSKS LDQGNDQKDD VGLELELKIH ASSLAQQDVS GKEKKESLTP  240
TANSSNSYSS SQVVQDSSPG GVNDILKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937201e-173AB493720.1 Arabidopsis thaliana At4g36060 mRNA for hypothetical protein, partial cds, clone: RAAt4g36060.
GenBankAF2516961e-173AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285497.11e-147hypothetical protein CARUB_v10006934mg
SwissprotQ8W2F21e-138BH011_ARATH; Transcription factor bHLH11
TrEMBLR0H1A01e-147R0H1A0_9BRAS; Uncharacterized protein
STRINGAT4G36060.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.11e-112bHLH family protein